How to control the Startup Preferences for all MapInfo Pro installations within an organization

Products affected: MapInfo Pro™
Yes, this is possible using the "Workgroup" Installation option.

MapInfo Pro is a desktop application that places user data on a map to simplify business analysis for data with a spatial component.
The WorkGroup Installation section will assist Administrators in setting up a MapInfo Pro network share workgroup that allows users
to share application data resources(such as coordinate system information and templates). Sharing these resources can unify the look of user maps and provide
consistency in the data.

For more information regarding a Workgroup Installation please review the Installation Guide for MapInfo Pro, found  here in the Appendix section "A - Workgroup Installations for System Administrators".
UPDATED:  October 20, 2017